- Hubble's constant has not been calculated, and when it is, there are problems. https://www.space.com/38496-hunt-for-hubble-constant-standar...
- Like the fallacious search for Vulcan, there are modern problems with the orbits of some of the outer planets. https://solarsystem.nasa.gov/planets/hypothetical-planet-x/i...
- A galaxy with 99 percent dark matter and one almost without any. https://www.quantamagazine.org/a-victory-for-dark-matter-in-... https://www.theverge.com/2016/8/25/12647540/dragonfly-galaxy...
- The bullet cluster, the speed of rotation in galactic arms, etc.
- The apparent changing rate of expansion in the universe.
- We have no idea of the physics behind red shift "caused by the metric expansion of space".
- We still don't know what gravity actually is.
The 1998 discovery of the accelerating expansion of the universe was beautifully simple and clean. It proved a huge swath of experts dead wrong. https://en.wikipedia.org/wiki/2011_Nobel_Prize_in_Physics
Dark matter/energy could be apart of the mix, but in light of the problems I would not bet it's the end of the story.