Fermentation goes through four phases, roughly paraphrased into: wheatey, champagne, alcohol, vomit.
You're describing a starter that is too 'old'. Very 'young' starters have little flavour, and then get sweet and honey-like before getting souuuuuur. Personally I'd recommend just leaving it on the counter and going to a 24 hour or 12 hour feeding schedule.
Flavour: you can absolutely scrape the bad stuff off the top and feed the starter to keep it alive. But if you're going to bake, remember that you're blending out the original product... If you start with some 'alcohol' or 'vomit' and mix out half, bread made the next day will be 33% bad-stuff. You want to mix out for say a week or so to get back to mostly tastey happy stuff.
Also: not sure if this applies, but in general making a mature starter is a 5 week process from scratch. Bubbles in the first few days are generally bad bacteria dying in the container you're using... You can still bake with it, but keep going for a week and a half and see what kind of lovely smells start coming :)