So there might be technical reasons why native apps are more privacy preserving than web apps, but I think that pales in comparison to having an actor that actually follows the principles of Privacy By Design running the platform [2]. If the platform owner doesn't actually want to vet what goes in their stores beyond "machine learning" [3], had a useless permission model until recently, or does dark pattern bullshit [4], I doubt there's much of a difference between native vs web apps.
At the end of the day the only thing that matters is incentives, and that informs how these actors will behave.
[1] https://www.theverge.com/2013/3/21/4133288/apple-to-finally-...
[2] https://en.wikipedia.org/wiki/Privacy_by_design
[3] https://gizmodo.com/google-boots-fake-ad-blockers-from-chrom...
[4] https://qz.com/1131515/google-collects-android-users-locatio...