I attended a screening of Passengers that was followed by a QA with the writer afterward, and it was pretty uncomfortable at times.
He said he wrote the movie because he really wanted to explore the idea that sometimes people choose love even when it has hurt them--he used the example of people who get cheated on, yet stay with their partner and work it out.
But it became clear that he was so interested in this aspect of the movie that he just could not get perspective on the central violation of Jennifer Lawrence's character, which is truly horrific. Being awoken early, to spend your entire life on a spaceship you can't escape, by someone who wants to have sex with you... that's some pretty clear callouts to core human fears like slavery, claustrophobia, rape, etc.
A plot device that was just supposed to be an obstacle to love, is totally overpowering. Based on the questions, a lot of the audience couldn't get over it, me included, so the happy ending just felt forced, hollow, and unbelievable.
I take Passengers as a great example of why it might be good sometimes for studios to bring in someone new to rewrite a script. I think any good writer, coming to that script cold, would recognize the power of the core horror and start from there.
Passengers spent a while high on "The Black List," which is a consensus list of the best unproduced scripts in Hollywood. I wonder if that put the writer in a position to maintain more than the usual amount of control for a spec script.