At your given budget I would have used a better bike and a smaller motor/battery. The combination of beefy motor on an inferior quality bike could be flat-out dangerous.
You can. You just move the motor, battery/controller to another bike.
What the author did is a great way to check the feasibility of the idea for himself without breaking the bank.
Don't weight ten hours of learning about bicycle assembly as though it were ten billable hours if it isn't. Compare it against the ten hours you were going to do other things in: reading, watching TV, going out for a walk, whatever.
If I was the OP, I would do this exact thing: after putting some more miles on the bike and saving up that gas money, get a nicer bike and swap the motor. Better yet, sell this e bike for $2k now that it’s all upgraded and use that money for a full upgrade.
Were I to do it over again I'd get a nicer model, because in practice I almost never lock up my bike outside anyway so the theft concerns aren't an important factor.
Hows the battery holding if you carry extra weight? How much does the total setup, you included, weights?
Edit: I would consider an extra charger and charge at work for that range, in case you want to stop by somewhere on your way to or back from work.
Though, it doesn't matter if you don't ride in the rain, and many people don't.