You're right that maybe long term they could set up more to serve commercial capacity on the back of higher commercial prices, but particularly in metro areas acquiring land, permits, and so forth and building physical infrastructure isn't quick.
The article actually does a horrible job of explaining the moral of the story, which is that charging a fee to discourage undesirable behavior can signal that the behavior actually is desirable or at least not disapproved (after all, you paid it, so you should get to enjoy what you bought), causing even more of the behavior.
Tesla is not trying to make money; they're trying to stop the behavior. So either they raise the price so high for commercial users that it's outright punitive, or they just say it's prohibited and skip all the money mechanics.
They chose the simpler option.
This sort of assumes the utility of a supercharger is the same to any commercial user, but it might not be, and a money cost would help keep capacity available for those commercial users without impacting non-commercial use too much.
That said, it seems like commercial fees could be turned around and reinvested in more superchargers pretty quickly. For now, they're significantly damaging the commercial value of their vehicles, new and used. Maybe they don't consider that a problem (and I would be surprised if any Tesla made an economical taxi, even before losing supercharger access).
[1] https://www.reuters.com/article/us-tesla-rideservices/tesla-...
The Israeli daycare study is an example of people being able to buy convenience and pay-off guilt when it's inconvenient to be on time, every now and then, through a small payment of a few dollars, which is peanuts compared to the actual cost of a typical daycare. Rest be assured, if they had to pay a $200 fine and had to do it structurally as a commercial user, it'd be a completely different story.
Not that I think it makes sense to charge commercial users at this point, but that's for other reasons...
The first thought I had was of that Freakanomics article.