While you are right that some feature engineering is needed, there's no reason DL can't be a part of your workflow.
https://www.slideshare.net/agibsonccc/anomaly-detection-and-...
https://www.slideshare.net/pacoid/humanintheloop-a-design-pa...
For more of the basics, my book on deep learning might help as well (minimal math vs the standard text book):