Motorola doesn't have to do that, they can hang up on Joe Average who did installs the mod ...
Cars aren't phones. The cost of installing a new engine is very different than the cost of installing a phone hack, the set of people likely to do so (and the associated cost to the manufacturer and other vendors) isn't the same, and there's going to be a lot more consumer awareness about what they're doing by replacing the engine. And really -- modern cars are locked down.