This stops the proxy attack you describe getting a session key, but not getting your password. Of course, the password alone is insufficient.
In what sense are the keys linked? I'm assuming it requires the browser to pass the actual domain requesting the auth?
Your original description is a bit ambiguous: were you referring to a case where the actual domain was being successfully man-in-the-middle'd with a valid TLS certificate? That's not something U2F aims to solve (and not something that people generally refer to as phishing).
Edit: Small correction: U2F makes use of TLS ChannelIDs, which, if I understand correctly, would help in that scenario (MitM with a trusted-but-attacker-controlled certificate on the "real" origin). I'm not sure if anyone other than Google makes use of this yet, as it requires a new TLS extension on the server.