Uh, no, it couldn't. A big botnet does not magically give you access to well-protected computers or networks. See http://en.wikipedia.org/wiki/Brute_force_attack for some perspective.
I don't care how big Conficker is, it's not going to break AES-256 any time soon (or really any large key based on an algorithm without a weakness).
Similarly, Conficker isn't going to be able to get into protected internal networks with a good firewall simply by virtue of having lots of machines.