Different abstraction levels are normally different ways of talking about the same physical phenomena. That is, they are parallel; they don't stack. The most basic one is the one that doesn't exist in our heads and doesn't have a model with predictions to violate.
What does "real" mean here? I'm using it as a proxy for truth, or perhaps better, accuracy in a model. That is, if a model of the world makes predictions about the world, the model is "real" to the degree that the predictions are correct. But all human models of the world have their limits, usually forced by our tiny little brains and meagre data input senses.
We take something that we've decided to categorize, and create symbols to represent commonalities, and theorize relations between the symbols, and test these theories, and gradually refine a calculus of symbols that we can use to apply to the world, and the system works, in so far as the commonalities stay common, and the symbols aim squarely at the average of the referents. But it's not reality; it's all made up, like mathematics. It's just a story, it's all in our heads and in narratives we communicate with one another. The symbols don't stick; the world moves on. People change; humans are animals that evolve over time, and continue to evolve. We can't even decide what a human is - the evergreen abortion debate - and other fictions like races, species and planets etc. shift as we change our mind.
So when you want to get serious about causes, you're going to be using a system. You're going to be using symbols and relations between symbols; you're going to define your symbols in terms of commonalities between events and matter that appear to repeat reliably. But it only works because we have so little thinking matter, so little data, so little input; it's the only way we can squeeze the enormity of the world into our tiny heads.