So it's basically one big fat weasel. They can't confirm that authorities officially sanctioned anything and that's where "were behind" comes into existence. Proving that you "weren't behind" is impossible.
However, I can see how, in the absense of documented sanctions, I can call the article's author, Matthew Shaer, a liar for his "undertaken" word.
WRT the article. Half of Vilnus's population was Jews. How on earth could a community fear pogroms when being in such numbers? Might as well be the side doing the pogroming.