There are database migration tools like Liquibase/datical and, I believe, Flyway that let you specify migrations not just of schema changes (DDL) but also data changes (DML).

I have used Liquibase in production for handling data changes for small-scale data (in megabytes) for dev/test/mock data and/or values in preconfigured application-controlling tables, but I wouldn't use it for gigabytes of transactional data.