Try to avoid structured programming and mutable state where possible. Apply functional programming idioms and use immutable data structures if you can. Rust adopts many features from functional programming languages: http://science.raphael.poss.name/rust-for-functional-program...
Borrow checker will interfere only when you are trying to manage mutable state that is hard to reason about. If you absolutely must keep some mutable data structure around, you can fall back to unsafe code. There is nothing wrong with it, but make sure to put all unsafe code into separate module and provide only safe interface, that is absolutely unbreakable no matter how you use its public API.
Make sure you know about this module: https://doc.rust-lang.org/std/mem/ It is nearly impossible to create complex data structures without it, even linked list implementation requires it. Learn to use replace, swap and .take(). These functions provide great example of a safe API for unsafe operations.