We at startup xyz take security seriously. We regret to inform you that on the night of 1st December 2016 our database was compromised. The database contained your name, address and fingerprint data.
Please see a plastic surgeon about resetting your fingerprints at as soon as possible.
Thank you, Startup Xyz
Or think about locking your phone. Most people only want to stop their friends and family - they're not going to copy you fingerprint. Even FBI nearly defeated by TouchID. (You're probably thinking that they could have easily bypassed it, but they only had 48 hours to do so.)
I do use the fingerprint reader on my iPhone, and I believe that the fingerprint data is never sent to another device. Ever.
There are real problems to using the iPhone fingerprint with apps, in that the apps tells me it needs to store an encrypted version of my password on iCloud in order to enable fingerprint unlock. The Bad Guys could get my encrypted password and I might never know.
But I wouldn't have to change my fingerprint in that case.
"The proposed system stores alphanumeric and biometric data (a combination of four fingerprints and the facial image). [...] The System is composed of a central database connected to national entry points."
If/when this comes to be, that database will probably be both well-protected and an incredibly tempting attack target.
*more to the point, the only way I see a government who stores biometric data being an issue WRT security: the government is after you (in which case they're likely getting what they want anyway), or it's a targeted attack from a foreign government (in which case biometric theft is the least of your concerns).