Other than being in a different directory, what difference is that going to make?Because, if they had picked their own directory and not a standard one like /usr/local/bin, then they would only be putting the homebrew installed binaries at risk. It would be better for defense in depth if they had not. As it is, all of their users are incentivized to unnecessarily give up a little security in favor of convenience. It's precisely that mindset that's one of the "enemies." (The other "enemy" is security without concern for convenience. We know from practice that's just as broken.)
You are going to have both in your $PATH in order to run the binaries, so if an attacker can write to either bad stuff could happen.
Normally, you'd need root privileges to write to /usr/local/bin. Since it's a very popular location for installing 3rd party tools, homebrew is effectively incentivizing users to have more writable executables than otherwise.
Homebrew also aids security by making it easier for devs to keep executables updated. They also deserve credit for making something useful. I use homebrew as well. However, I still really wish they would've made a different decision about /usr/local/bin.