Yep, like passport control or customs control (at the airport).
On a related note, I have yet to encounter a French speaker saying in English "Sorry to derange you", but I am hopeful it will one day happen.
But check also has an interesting etymology. Its many meanings include a type of payment note (aka "cheque"), to obstruct ("check somebody's progress", "body check"), to verify, to inspect; also checker (divide into small squares) and exchequer (the UK treasury)... all come from the Persian word shah, meaning king, through chess-related metaphors. (Also the word chess itself)
If "border control" means literally controlling the border, does that make "passport control" some sort of obtuse synecdoche, where they check the passport in order to control the border?