VAT is irrelevant for companies.
Apple collects VAT on behalf of the EU governments when selling products and passes those on to the respective governments. Other companies collect VAT on behalf of the same governments when selling products or services to Apple; Apple gets reimbursed by the same governments for the VAT it paid. It's effectively a zero sum game.
The customers pay VAT, Apple only collects it on behalf of the governments and passes it on (after deducting whatever VAT they already paid on their expenses).
This is why in EU countries prices for end users are typically presented as flat sums (VAT included) but prices for businesses are generally presented with VAT listed separately (because businesses don't care about the VAT they pay themselves).