For example, consider the case when a new domain owner attempts to block all bots from spidering their site, by adding something like this to their robots.txt file
User-agent: *
Disallow: /
This is actually a fairly common case when domain resellers purchase expired domains.Now when you try to visit the archived link, because the live robots.txt file disallows bots, you won't be able to access the archived site (which may have been owned by someone completely different).
[0] https://archive.org/post/406632/why-does-the-wayback-machine...
It makes much more sense to archive the robots.txt along with the content, and use the robots.txt linked with that version of the site. Updating the current robots.txt shouldn't affect a past archive.
Standalone flash players exist, and flash-to-HTML translation will continue to improve.