SirCmpwn is right. If this guy is innocent, his life is ruined now. And we've seen this pattern elsewhere, outside of tech; teenagers/adults falsely accused of rape or worse. People pissing behind a bar with a permanent contextless "sex offender" mark on their record. Etc. Lives ruined - innocent people escaping justice.
I honestly think this can be taught: Respect for the presumption of innocence. Why people should be presumed innocent should be taught from a young age. A similar respect as the one america gives to freedom of speech (although I'd hope it would come with a better understanding of what it means).
PS: I don't want to sound partisan or anything - I have no idea what this TOR investigation and affair is all about. In fact that's what's scary; I have no idea about the facts of the case, yet I've now been told that Jacob Appelbaum is a sexual predator.
Edit: It looks like nobody in the replies understood what I was talking about. It's naive to assume that the public at large respects the presumption of innocence that the govenment grants this man and other people in his situation. The system is broken if the citizens don't understand why this is important. Unfortunately, it looks like a lot of people even in the comments here don't understand why it's important, so it looks like this is falling on deaf ears.