Yes, but mobile and desktop are quite different. For one, desktop has a lot more power - one of the biggest issues with PhoneGap etc. is that it's just slow, and, particularly, single threaded. That doesn't matter so much on desktop.
Also the other complaint is that PhoneGap doesn't use native UI components. Desktop has a huge variety in UI compared to mobile (think Microsoft Word vs Photoshop) - another "not native" format isn't quite as notable.
More importantly, though, is that developers hate PhoneGap and the experience it provides. I'd be interested to see the results of a survey where normal users are given a PhoneGap app and asked to point out what's wrong with it. I suspect many would think it's just fine. Not great, but fine. Similarly, if you asked anyone about the Slack desktop app I suspect they'd say it's fine.