That's actually not what I'm talking about, though, since ultimately those are just DX conveniences. The big difference is that, by default, npm installs dependencies in a nested rather than a flat manner. This means that you can install "library A" and "library B", which both depend on "library C", without worrying about potential incompatibilities between the required versions of "library C". This isn't possible in Python; one consequence is that you see a bunch of libraries that vendor their own small subsets of six to avoid having potential dependency issues – you don't get this in the Node ecosystem, because you can just pull in that dependency and not worry about potential version conflicts.
All of this adds up to a much nicer experience when developing libraries.