I totally agree with your way of working for most applications, it is what I do most of the time too, and I agree with the article in that this point is given more importance in DE courses than it really is for engineers, but there are perfectly valid use cases for these theorems in engineering.
For PDE's it's much more interesting, as the author points out.
That said, I do think there is some pedagogical value in teaching existence/uniqueness even though the result may not be so interesting because it shows students that it's possible to get information about solutions directly from the equation even without explicit formulas available. It also introduces them to the sort of abstract arguments at the core of modern mathematics.