Looking at a 2013 report (http://www.ncbi.nlm.nih.gov/pubmed/23796855), results are quite different. Or this interview (http://www.washingtonpost.com/news/inspired-life/wp/2015/05/...) showing potential physical changes in the brain.
Furthermore, meditation isn't about objective health gains to many people. It's about living in a different way, in a different state.
As such therapies involve only guiding and helping people to think differently, it demonstrates that such guidance has have scientifically measurable effects on the mind and body.
It follows from the above that the likelihood that practices such as meditation could have non-zero effects is high. Whether Vipassana itself does so could therefore be tested in the same manner as CBT was, and perhaps that is what should be done...
[1]https://scholar.google.com/scholar?hl=en&q=randomized+contro...