I love your research on this, with SDR Dongle.
I'm building up my ADS-B receiver with a NooTech SDR. One question, you talked about capturing squawks with your SDR - did you try for ADS-B or do you know if these aircraft employ it? This would give you location.
Kudos to you, man!
tldr: I didn't use Flightaware; I observed these aircraft directly using my own receiver, decoding their callsigns and squawk codes, and correlated with FAA records and the company confirmed by the FBI itself to be a front.
But it's true, most of this evidence is still circumstantial. Just because a company with an odd name and no internet presence has the same PO Box as the DOJ doesn't prove it's a front company; but it's pretty suggestive.
Had you heard about the discovery of the plane last year in Sacramento? Here [1] is the story where they figured out the "JENNA" call sign. Here is the story that started it all. [2]
[1] http://www.news10.net/story/news/local/arden-lariviera/2014/...
[2] http://www.news10.net/story/news/local/sacramento/2014/03/18...
I found one link that claimed he found an FAA or DOJ publication that had at one time mentioned the JENNA callsign, but was then edited to remove the reference.
Interested to see what JENNA stands for.
Anyways, great to see this stuff still so accessible even if hidden at first glance.