I don't know much 'bout the wider world, but FPGAs are hot right now in atomic physics and quantum computing, e.g.
http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.109...
http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.109...
results which were only really possible when those labs started switching to FPGAs from the DACs they'd been using previously.