So Safari takes CSS color values assumes they are in sRGB and converts them to your display profile. For Chrome and Firefox this is a different story. They use their own render engine so no conversion takes place here. This is the reason why colors differ between Safari and Chrome/Firefox.
ColorSnapper recognizes if you pick from a Color Managed App and converts the color back to sRGB. There might be a slight difference because of rounding issues, but it's the best you can get.
As for picking from PDFs or Adobe Photoshop: this depends on the app you are using (Preview App, Adobe Reader etc.) and if they have their own Color Management, but that is a little beyond this post. We will soon write a blog post about that on http://colorsnapper.com