You have to enter all your income/expenses in manual, but that's part of it's value - it really makes you accountable for what you spend.
Since tracking all expenses for maybe 5 months, I have probably saved thousands of dollars simply by making cheaper choices and being mindful of excess.
bonus: here's Jesse Mecham's MicroConf 2014 talk http://www.microconf.com/videos-2014.html
I wish the mint folks had never sold out. But you can't change the past, so now I just hope Intuit doesn't ruin it before the next personal finance tracking startup comes along to kick mint's ass so I have a replacement.
The Budget spreadsheet has a (annual/qtrly/mthly/weekly) budget for about 100 items (this is the bit that's evolved most over 10+ years), broken into 15 categories (including Investment and Cash Reserves; this also evolves). Most expenses are Food or Entertainment - these get a fortnightly cash amount, rather than having to reconcile that individually. Everything else goes on a Debit Card and is recorded - takes us about 20-30mins a fortnight.
The Personal Balance Sheet was a revelation for me at the beginning of last year - suddenly when we talk about money, we're talking about our net worth and assets not how much we spent on lunches or clothes. I write it out longhand as part of my monthly 'Board' financials - so it includes my own business, property, and some categories like Other Business Equity that are currently empty. The Wealth+ App graphs it all, and you can see some cause and effect - our Cash dropped last month because of some renovations, but our Property Values have gone up this month.
A Funds Manager I know who used to lunch with these guys for work once told me high-net-worth-individuals disproportionately use cash - they see money as real, not abstract.
For me, there's an analogy with understanding my finances. Sure, I can have a system spit me out a personal balance sheet each month - but hand-rolling my own in coloured markers connects me to the reality.
I'm always happy to share these templates if it might help anyone - email is in my profile.
[Edit] I should add, I'm going to review the other options in this thread. Like a To Do List app, with Budgets it can be hard to find something that replicates how you do it.
Learn and practice double-entry accounting including how to manage many accounts: payable accounts, receivable accounts. For a personal solution, it can't be beat (IMHO).
Open source, command-line, double-entry accounting system that handles multiple currencies, stocks, recurring payments, etc with highly customizable reporting.
I just send them a prepaid envelope full of my receipts every week or so.