I agree with your problem with the phrase "legitimate researcher". I'm usually supportive of the EFFs position on most issues, but sending a Tweet like this guy did was pretty dumb. Even the disruption from a "overreaction" is a problem.
Also, the gateway between the aircraft safety systems and the CANBUS is one-way. The worst he could have done is shutdown the In-Flight Entertainment system, and inconvenienced a bunch of passengers.
I'm not saying that the possibility of security flaw isn't there, only that this CANBUS issue isn't it.
A legitimate researcher would arrange a ground test, or even a test flight, and not experiment on an airliner with passengers. They can do "hardware in the loop" tests on the ground, with minimal risks. The FAA are actually involved in requesting security assessments on airline systems with safety implications.
IMHO This guy come very close to crossing the line of "interfering with the safety of an airliner" when he conducted previous tests, and that is most certainly is illegal. People have gone to prison for less.
The EFF should be pushing for further evaluation of the actual issues, whatever they may be, in an appropriate manner. If Boeing/Airbus blow off the EFF, push back harder.
A well trained crew can operate a 737 quite safely using the Standby Flight Instruments for an emergency landing, even if some sort of compromise shut down the primary Flight Management System and Primary Flight Displays.
I happen to know several computer programmers/security researchers who are also test pilots. More than one called the CANBUS risks "inconvenience" and not safety of flight.