This unfortunately makes the whole industry look bad and the top companies are trying their best to fight back against all these crappy formats and fraud.
At the end though, the implicit deal is that you are reading content produced by the publisher, and it's accessible for free because you're exposed to ads. If you don't like the ads, please don't read the content. That's all there is to it. You're free to vote with your traffic and show publishers that their ad setup won't be tolerated, but adblock plugins are an easy way out that helps no one in the long term.
EDIT: I can tell by the downvotes that people find this a touchy topic and would rather just install adblock then consider the realities.