With all due respect, Karpathy is serious -- and funnily enough he implemented deep learning (convolutional neural nets) in Javascript[1]. Admittedly he did it mainly for fun + browser demos (it's on the front page of Stanford's Convolutional Neural Networks for Visual Recognition course[2], which he is an instructor for), but for learning about the concepts, it's a good enough language.
When the students understand the concepts and what they're interested in, then we can nudge them to focus on choice of languages. Even then it's a dangerous domain as there's so many options.
Deep learning and want to focus on algorithms or only previously had high level experience? Python with Theano is a good bet and can take advantage of the CPU or GPU. Even Python + numpy.
Replicating existing work in the literature and want to take advantage of the some of the existing libraries? Much of it is in Matlab.
Doing something crazy on the GPU? C for OpenCL ...
The list keeps going, but before getting to any or all of those details, the first step is understanding the concepts.
[1]: https://github.com/karpathy/convnetjs
[2]: http://cs231n.stanford.edu/