I've also read a discussion with PHK somewhere that he didn't like OpenNTPD because it had no auth (sorry, can't find the source again). I guess this complaint has been mitigated recently now that TLS auth is supported in OpenNTPD [3].
/edit: not sure if it's clear but I was comparing OpenNTPD to Ntimed. But the named differences still exist when compared to ntp4.
[1] http://phk.freebsd.dk/_downloads/FOSDEM_2015.pdf page 13 and 14
[2] http://www.bsdnow.tv/episodes/2015_02_11-time_for_a_change at 30:30 and 34:00
[3] http://undeadly.org/cgi?action=article&sid=20150210103656