Is line numbers considered "highlighting"? I mean, I get why you would want it but I never would have thought to ask for it.
Clutter and simplicity is not an emotional argument. It becomes verifiably more difficult to maintain a code base with each new line. And since he's the one doing the maintaining, his position seems quite reasonable.
Secondly, he seems to have a strong aesthetic aversion to line numbers, and I can totally respect that. Frankly, among popular open source projects, those whose developers have the strongest sense of style and design and usually (not always) the best.
I like Prism so far and don't have any issues with it yet