The point of an automatic formatter isn't to make the code look pretty. It's to make the code non-ugly, with as little effort as possible. Obviously, there will be cases where the formatter screws up and writes out something pretty ugly. The point is to train yourself to ignore these, because honestly time spent looking at, angsting over, and fixing bad formatting is about the worst possible use of your development time. Instead you could be thinking about solving a problem that hasn't been solved before, or making the product easier for a user to use, or refactoring semantic issues in the code that trip up developers.

That seems good in theory.

Or just clean up some nags so that version control behaves better. But if the only option is not running it at all or having all the code automatically fit to whatever the people On High have deemed to be visually pleasing? Yeah...