I agree with you that all languages are tools (I love working with all kinds, actually). But aren't some tools better at some things than others? Or what would we need so many for?
I'm not saying Lisp is the nail gun and everything else is an inflatable mallet, but I do think there is a difference.
What I got out of the article is that Lisp is a tool that worked pretty darn well in a couple cases. I feel that's a good thing, because I kind of like Lisp.