So in the 90's Sun Microsystems created Java, which has two components, the programming language and the runtime. The runtime (the Java you install) lets you run things written in Java on any device regardless of OS or CPU architecture. Write once, run anywhere. This was a huge threat to Microsoft. Why write Windows programs when you could write Java programs and they'd run on any computer?
So Microsoft wrote their own Java runtime called the MS JVM, and made it part of Windows, it extended Java to do Windows-only things, meaning there were now "Java" apps that could only run on Windows, destroying the whole point of Java.
This became part of the antitrust trial because it ruined Sun's product. In a separate case, Sun sued Microsoft and won.