If they want to redesign their driver so it fails to work with non-genuine FTDI chips, go for it. Nobody will judge them. Heck if they want to show a message that informs the user they're using a fake, that's fine too.
I think most people seemed to agree that bricking fakes was too far (and also could be considered illegal in some countries/areas). It also negatively impacted innocent parties (e.g. consumers who purchased generic goods, which happened to contain fake FTDI chips).
Plus if you're in the business of bricking things, it is too easy to make a mistake and brick your OWN stuff. I mean software bugs are common, and it is best to stay away from a set of them which indefinitely makes chips malfunction.
PS - I wonder if Microsoft got in touch and essentially told them "we will pull your driver from Windows Update unless you do it first. It won't return until it is fixed." We know from the previous thread that Microsoft was looking into this.