There's legal freedom, and there's practical freedom. Sadly, the latter is seldom talked about.
You can be stuck in a maze, in a pit or under a tree trunk. You're legally free, since no law or copyright license is saying may not get out. Yet, you're stuck and if you can't get out, you're not free at all.
When it comes to software, it is the size, complexity and complicated interdependencies that make the maze. As the system grows, an individual's practical freedom erodes. For instance, I complain about the web a lot. Even with a browser's source code and a permissive free license, there's close to nothing I can change about it in practice. It would be far too much work for me to maintain millions of lines of code and remain compatible and interoperable with a huge, fast-changing stack of technology... and the more you diverge, the harder it becomes. It's an uphill battle, and at some point you have to give up if you're not the giant. So the four software freedoms are reduced to two (or less). In practice I don't have the freedom to do what I want.
I think the FSF's stance of reducing freedom to a merely ethical issue is alarming. How would Dr. Stallman have felt if he had gotten his printer driver with a free license but so much code and complexity and dependency that it would've been impossible for him and a small team of hackers to actually port it and make it run on his system?
Of course, systemd alone is not approaching that level of complexity. Except that it's not only systemd.. the trend seems to be that all aspects of a modern OS are getting larger and more complicated. A little here, a little there, it all adds up and becomes a lot, everywhere. It's a sad trend.
There was a time when you could've picked up a book that pretty much describes all of your system's hardware at a low enough level so that you could start writing your own bootloader and OS from scratch, with the knowledge that you can interface with all the logical hardware devices. And it didn't take hundreds of thousands of lines of code. Now the amount of accumulated cruft we depend on is so large that the idea of writing your own not-a-toy OS is laughable...
Standing on the shoulders of a giant is necessary and helpful, but when you have to do too much of it, it stifles innovation and encourages monocultures.
I don't have anything against systemd per se; it doesn't represent my ideals, doesn't bring me features I want, and so I don't want to use it. If Ubuntu and Debian want to use it, they're of course free to do so. However, I am concerned that with the notion that "systemd has won", its proponents are going to assume it to be everywhere and build future software with the attitude that it is okay to depend on it -- who cares about the people who would prefer not to use it, let them suffer for disagreeing with the king!
Before the systemd rage, sysvinit might have been "the winner" on Linux in the sense that it was most widely used and supported. But we didn't have this sort of polarizing "sysvinit has won, fuck everyone and everything else" notion. Other distros with other init systems have happily coexisted all along, and these other distros haven't had to constantly fight a growing dependency on one specific init system.