In aerodynamics, which has had much more time and money invested, CFD can almost completely replace the wind tunnel, but only for aerodynamics problems we understand (ie wings, fairings, nacelles, turbine blades, backward facing steps, etc). As soon as you leave the validated/understood world, CFD becomes a tool used to augment the designer's intuitions, with the wind tunnel providing an essential ground truth.
Fluid dynamics is the business of predicting complex nonlinearities to a few %, and imo, complex nonlinear models are only useful when validated. It's telling that when they debated building the DDG1000 they built a 1/4 scale ship:
http://upload.wikimedia.org/wikipedia/commons/4/4a/Advanced_...
I'll add that it is not just processing power that is the issue. The Navier Stokes equations for fluid flow (and the related equations) do not have closed form solutions. And even if they did, there are observed flow phenomena that cant be captured. CFD is an area where our mathematical understanding of the problem needs to advance further before we can accurately model in silicon. Some incredibly fascinating problems there - I sometimes wish I had stayed in the field.