I don't understand, what has the phone being charged got to do with anything?
Presumably the idea is that techniques used to convert a laptop or phone into a bomb would render the device inoperable. It certainly seems like a harder task to make a bomb that is also a phone, rather than a bomb that used to be a phone.
How they plan to mitigate phones with bad batteries I have no idea- it's fully charged coming through security, but 30 minutes later, it's completely dead? Must be a terrerist [sic].