Something there doesn't sound right (and brings up questions about how do you even manage so many random libraries and whatnot).
Dependency and package management isn't that difficult and when I wipe my hdd/ssd it usually takes me some 30 minutes to get my generic environment bootstrapped and up to date (with a mixture of shell scripts and brew install `my-package-list.txt`). After that, each project takes few minutes to download all deps/libs with some dependency management tool.
Just the same way I would imagine that you've got your oh-my-zsh config version controlled (speaking of oh-my-zsh, I'd like to also mention prezto[0]!)