I understand your perspective and will take your comments under consideration for future efforts or subsequent iterations of the existing benchmark.
However let me reiterate the intent of the existing work... The benchmark's purpose is to educate the community on the potential benefits of a LXC based technology (primarily from a Cloudy perspective) by providing a set of data points with full disclosure as to the means / methods used to perform tests and collect results. I expect any organization, group or individual considering actions as a result will perform their own validation to assert the technology choice is beneficial for their consumption prior to adoption. I believe this criteria is met in the current publication and therefore the results will stand on their own.
As to test configuration variations such as those stated above (disable KSM, boot by clone, etc.) -- I believe additional data sets collected via variations or other benchmarks are key to obtaining a well rounded understanding of the factors / benefits involved in this space and I encourage the community to create / publish such results. As an example I would like to gauge the impact of the various KVM guest cache modes and docker LXC storage providers which I believe are fair game to test and add as a variation to the existing benchmark.
Should you wish to iterate other configurations / requirements you believe are worth exploring I can make note of them for the next round of tests (time permitting). In addition I'm more than happy to document the instructions to setup and perform these tests so that others can run it themselves. I gladly welcome additional tests and data points from the broader community at large.