Yeah, there's history behind this, but really, it was TWELVE YEARS AGO. It's time to move on.
An operating system should come with some basic tools like a command shell, file manager, web browser, text editor, calculator, media player etc. As a user, if I want to upgrade any one of those things, I can do so. But please don't leave them off the system just because there are 3rd party alternatives. And please don't show me a screen full of options for every one of them.
This was a silly issue to squabble over back in the 90's, and it's only gotten sillier since.