Imagine this: I exploit malleability and deposit directly in my BTC-e account, exchange to LTC etc, etc on dozens of exchange and finally to USD. I cash out to cash and disappear. I of course gave my final stop false information. So now my last victim gets a claim, if this last victim happens to be an exchange and it is forced to pay up and the amount is somewhat significant that exchange is now insolvent. Whose problem is that? The exchange declares bankruptcy and their customers get a haircut.
This won't happen, it does more harm than good.
The result is that even if you can prove that someone else holds a dollar bill that was stolen from you at some point, you do not necessarily have the right to get it back.
See also the Wikipedia article on the principle of "Nemo dat quod non habet" ("no one gives what he doesn't have"): http://en.wikipedia.org/wiki/Nemo_dat_quod_non_habet