Conjectures vs. Hypotheses
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In some parts of science 'conjecture' can also be used to give the connotation of a weaker, less grounded 'hypothesis'. This seems to be particularly used in astrophysics, where 'conjecture' sometimes means 'very speculative hypothesis'.
I don't find the distinction that important, though; it's pretty rare that flipping these two terms causes a real misunderstanding.
A conjecture seems more "We observe [x], but there is no way to formally justify why this happens, or if it always happens."
I don't know if there's actually a distinction between these two – it's just my (perhaps naive) perspective.
Perhaps you're thinking of the debate with creationists and similar people over the term 'theory'?
Conjecture: some evidence there
Hypothesis: strong evidence or very strong evidence, such that sciences would have accepted the hypothesis as a theorem. The Riemann Hypothesis mentioned, is the prominent example: Everyone beliefs it's true for more than 100 years, none has provided a full-featured proof BUT even huge clusters failed to find a stretch of evidence that might NOT be correct.
Mathematicians also use the word "hypothesis" to refer to a whole implication in the phrase "inductive hypothesis". But it most often simply means the left side of an implication: the phrase "A is true by hypothesis" means that A was assumed to be true—that is, it was the starting point of a proof.
A conjecture is someone's conjecture while a hypothesis is derived from a system itself ("my system has a valid hypothesis"). We don't "derive conjectures" from brains, they're made by persons.
When someone says "my hypothesis is", there is an implicit system they are strictly speaking from (channeling the system? Either way, they're not saying what the believe but rather placing confidence in their understanding of the system strictly spoken from) — they're saying that this is provable within the system we know, but personally they do not have the proof on hand and it may require a little work. ("I don't know all the rules off hand!")
A conjecture has an implicit system, but the speaker has a purpose to say that the system as we know it may have a derived rule we have not discovered. There is "intuition" with conjecture, and "mention" with hypothesis".