First, you announce that you only have 4000 BTC in deposits. Then you build this tree, and at the very bottom layer you add a node with a -1000 balance. You pair that node with your (or a conspirator's) real node holding more than 1000 so that any node above yours (read: everyone else) sees a positive balance at every point in the tree. Everyone can verify they're in the tree, the numbers add up to what you claimed publicly, but you're now successfully running a fractional reserve! And the only way to uncover such a scheme would be to publish all of the balances for every account.
Am I missing something?
Edit for clarity: the node you pair with is your own, so that no real user sees the negative sum.