Also, Lucene at its core is an Index. Changing the query strategy might require reindexing. It is perfectly valid to throw data at it, build the index and throw away the source. You will just never get it back again.
While ES can be used and tuned as a store just fine, it is not necessarily its raison d'etre.
I help run a large ES cluster (with canonical data in MySQL), and I consider this cautious attitude by the ES developers to be a good thing.
For example, Elasticsearch has poor availability characteristics - both because it is master-slave and because it focuses on ensuring consistency - relative to, for example, something like Riak.
There's no holy grail of data storage... ElasticSearch is really nice, and if it fits your needs, more power to you.