You are looking at a picture of the surface of the silicon chip with the circuits etched on it. I'm not sure what the holes are, there are too many of them to be wire pads, perhaps this design uses holes to aid in heat transfer. The colors are post-processing added to the image to highlight different functional units of the chip - I'm not sure what they all mean in this case, but on CPUs, the largest/most uniform areas are always the L2/L3 cache.

If you pick up a packaged CPU, you can't see this surface unless you rip the package apart. In a package, this surface is mounted face down on a tiny PCB which connects the wires to pads or pins for the socket that the CPU is inserted into, and also, a metal lid is slapped on top of the silicon chip (with thermal paste in between). Then a heatsink is slapped on top of the metal lid.

You're looking at a very high level picture of the CPU. The different coloured sections represent the different logical segments of the CPU. I can't tell you specifically what each section is and maybe someone more informed could clear that up but among there will be: registers (memory), alu (math), CU (control, brain), buses (transport), the GPU, and some other miscellaneous sections (IR,PC,etc..). For the holes, I don't know what they mean I have never seen those on a cpu die.

Teal squares on right: CPUs

Teal rectangles on right (in between squares): L2

Orange mass on left: GPU

Blueish rectangle on bottom: DDR interface (?) Possibly L3, I forget if these actually have L3.