The server should have the standard cmdline MYSQL admin installed on it (one imagines).
Try opening a command prompt and running:
mysqladmin
[obviously with username and password]
If it is there us should let you run the SQL commands you want. (ref: http://www.manpagez.com/man/1/mysqladmin/)If you want an SQL prompt then mysql on the commandline (will 100% be there) will work
mysql -u <user> -p <password>
http://www.manpagez.com/man/1/mysql/