That's the major issue at play, but the article is about Apple. There can be more than two things happening at once. Most Apple fans natural reaction to any negative article about them is "Why Apple?" and to work from there.
Because more often than not, the answer is "Because it draws clicks". Since that isn't the case here, the next step is typically "Is this unique or specific to Apple, and does the issue at hand pertain to other devices or OSes?" In OPs opinion, it isn't. His evidence is the high cost of zero day exploits relative to other platforms.
He's not "defending Apple by saying their competitors are worse", he's providing context to an article that provides none itself. If negative articles about Apple weren't such rabid click bait, this wouldn't be needed as it would be part of the reporting process. Unfortunately, that isn't the case.
"Wake the fuck up!" is an extremely patronizing sentiment. I can be both aware of the overall NSA situation while simultaneously defending Apple from knee-jerk reactionaries. They aren't mutually exclusive activities.